1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatactaaagttttggcagccccactgaacccaagaaacaaaaaggatagacaaatgggtactttctttctcatatgctgatgtggtttttgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG
species | Oryza sativa |
transcript | LOC_Os11g36070.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGEST: gi|29623258|gb|CB628269.1|CB628269
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAG
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTEST: gi|29626153|gb|CB631164.1|CB631164
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTEST: gi|29665385|gb|CB661660.1|CB661660
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTEST: gi|29626975|gb|CB631986.1|CB631986
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTEST: gi|29672693|gb|CB668968.1|CB668968
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTEST: gi|29623293|gb|CB628304.1|CB628304
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTEST: gi|25778077|gb|CA752829.1|CA752829
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: GTACAAAAAATG GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
gatagacaaatgggtactttctttctcatatgctgatgtggtttttgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG
tgctgat putative branch site (score: 3)
tttttgt putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatactaaagttttggcagccccactgaacccaagaaacaaaaaggatagacaaatgggtactttctttctcatatgctgatgtggtttttgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA