1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaacaactcaatgagatgctttctgtgctcacttcattctgagacccttgtccatcatataattcaaatgtcgtgaaccaatgctgtatctttttgtcagGACGTATTATTTGTGGACAGTGGTGATCCTTGGAACCCAAATCCTACAACAGTGGATAATGTGATGAAAATGCTTGAAGGTATCCACAAGGTTTTGAAGC
species | Oryza sativa |
transcript | LOC_Os11g35340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTTCGATCGTGACAGCTTCGATCTCGTGATTGAGAAAGGCACCATG GACGTATTATTTGTGGAEST: gi|58654845|gb|CK043525.1|CK043525
genomic: TGCCGTTCGATCGTGAGAGCTTCGATCTCGTGATTGAGAAAGGCACCATGgtattggtac ... tttttgtcagGACGTATTATTTGTGGA
EST: TGCCGTTCGATCGTGAGAGCTTCGATCTCGTGATTGAGAAAGGCACCATG GACGTATTATTTGTGGACAGTGGTGATCCTTGGAACCCAAATCCTACAACAEST: gi|58587157|gb|CF985465.1|CF985465
genomic: TGCCGTTCGATCGTGAGAGCTTCGATCTCGTGATTGAGAAAGGCACCATGgtattggtac ... tttttgtcagGACGTATTATTTGTGGACAGTGGTGATCCTTGGAACCCAAATCCTACAACA
EST: TGCCGTTCGAGCGGGAGAGCTTCGATCTCGTGATTGAGAAAGGCACCATG GACGTATTATTTGTGGACAGTGGTGATC
genomic: TGCCGTTCGATCGTGAGAGCTTCGATCTCGTGATTGAGAAAGGCACCATGgtattggtac ... tttttgtcagGACGTATTATTTGTGGACAGTGGTGATC
ccttgtccatcatataattcaaatgtcgtgaaccaatgctgtatctttttgtcagGACGTATTATTTGTGGACAGTGGTGATCCTTGGAACCCAAATCCTACAACAGTGGATAATGTGATGAAAATGCTTGAAGGTATCCACAAGGTTTTGAAGC
tctttttgtc CT-rich tract
atcatataattcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacaactcaatgagatgctttctgtgctcacttcattctgagacccttgtccatcatataattcaaatgtcgtgaaccaatgctgtatctttttgtcagGACGTATTATTTGTGGACAGTGGTGATCCTTGGAACCCAAATCCTACAACAGTGGATAATGTGATGAAAATGCTTGAAGGTATCCACAAGGTTTTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
gaacaac
- - - - - - - - tgctttc
- - - - - - - - - - - - -tgctcac
- - - - - - - - - - - - - - - - - cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctg