1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttggttgataagcataagcataagcgaaaagatgaggttgttatttactagaatgttgtcattcgcattactgtcatactgaactgaagttgaccttgagGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAG
species | Oryza sativa |
transcript | LOC_Os11g34770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTACCAGAAAGAAGGGGACAGGCCAACACTCCTGATCACTTCTGACATA GTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAAEST: gi|88368907|gb|CI633539.1|CI633539
genomic: ATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAgtatgccttg ... tgaccttgagGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAA
EST: ATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATA GTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAA
genomic: ATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAgtatgccttg ... tgaccttgagGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAA
tactagaatgttgtcattcgcattactgtcatactgaactgaagttgaccttgagGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAG
agttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggttgataagcataagcataagcgaaaagatgaggttgttatttactagaatgttgtcattcgcattactgtcatactgaactgaagttgaccttgagGTGGTCGTCCATGAAGGGATTATCAGAGAAAAGCCAACCACGAAGGAAGAAGCACGCCAATTCCTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - agcataa
- - - - - - - - - - - - -gaaaagat
- - - - - - - - - - - - - - - - - - gttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaactg