1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttctcatatttccttgttttcgatgatctcaactacaatttagtggaaccatgatttttggattttatcatctattaaaacatattttttgttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAG
species | Oryza sativa |
transcript | LOC_Os11g31700.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88253414|gb|CI352040.1|CI352040
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88419813|gb|CI513865.1|CI513865
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|12404885|gb|AU166486.1|AU166486
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88380040|gb|CI513630.1|CI513630
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88465097|gb|CI514869.1|CI514869
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88462358|gb|CI514490.1|CI514490
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88435941|gb|CI514080.1|CI514080
genomic: TTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGEST: gi|88455242|gb|CI516880.1|CI516880
genomic: TTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
EST: CACAAGGGCAAGATTTGTACATGGAATTGGGAG TTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
genomic: CACAAGGGCAAGATTTGTACATGGAATTGGGAGgtatgttctc ... ttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAG
aaccatgatttttggattttatcatctattaaaacatattttttgttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAG
ttttttgtttt CT-rich tract
attttatcatctatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctcatatttccttgttttcgatgatctcaactacaatttagtggaaccatgatttttggattttatcatctattaaaacatattttttgttttatgcagTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA