1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgtttggtatatgtatatgccaattatttaatttcatttaatcttataagaaattacatgggtttgtatatgctgttaatatgtatatttgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG
species | Oryza sativa |
transcript | LOC_Os11g28300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGEST: gi|88390701|gb|CI609326.1|CI609326
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGAGCTCTAAGTGATGACG GTACTATCAACTGGAEST: gi|44678067|gb|CR291501.1|CR291501
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGA
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGEST: gi|218479784|gb|FG960708.1|FG960708
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGEST: gi|33677157|gb|CF305396.1|CF305396
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACEST: gi|66912648|gb|CX099496.1|CX099496
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGAC
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGEST: gi|58589289|gb|CF987597.1|CF987597
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGEST: gi|42592205|gb|CK738691.1|CK738691
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGEST: gi|33687017|gb|CF315256.1|CF315256
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
genomic: CCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcct ... tgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAG
tataagaaattacatgggtttgtatatgctgttaatatgtatatttgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG
tgttaat putative branch site (score: 18)
tttgttctc putative PPT
ttaatatgtatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttggtatatgtatatgccaattatttaatttcatttaatcttataagaaattacatgggtttgtatatgctgttaatatgtatatttgttctcaagGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
atgtttg
- - - - - tatgtat
- - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - ataagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt