1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcagtaaatgtaattattttatttttcttgtaatttatatatctatggtccacttgtaaatttctgaatgctcatcgccatattttttaatctctgcagGTTCCAATCTATTTACAGGTTCCCTAAAAAAAAATCTATTTGCAGGTTCCAGTCTGTTGTCTTCACAAT
species | Oryza sativa |
transcript | LOC_Os11g19864.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGAGACAAGGCATTACAAAAGCTGGAGGAAAAGTTATTTGCTGACTAAG GTTCCAATCTATTTACAGGTTCCCTNNNNNNNNNTCTATTTGCAGGTTCCA
genomic: CCGAGACAAGGCATTACAAAAGCTGGAGGAAAAGTTATTTGCTGACTAAGgttagatatc ... atctctgcagGTTCCAATCTATTTACAGGTTCCCTAAAAAAAAATCTATTTGCAGGTTCCA
atggtccacttgtaaatttctgaatgctcatcgccatattttttaatctctgcagGTTCCAATCTATTTACAGGTTCCCTAAAAAAAAATCTATTTGCAGGTTCCAGTCTGTTGTCTTCACAAT
ttttaat putative branch site (score: 3)
tctctgc CT-rich tract
atattttttaatctct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagtaaatgtaattattttatttttcttgtaatttatatatctatggtccacttgtaaatttctgaatgctcatcgccatattttttaatctctgcagGTTCCAATCTATTTACAGGTTCCCTAAAAAAAAATCTATTTGCAGGTTCCAGTCTGTTGTCTTCACAAT
- - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgc