1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgcttgtacatcagtcatacaactatgacacatgttttgtctgagggttcttttgcctttacgcagtgcattattgacacttcttgtggtgtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCACCTGTACAATAAATGACT
species | Oryza sativa |
transcript | LOC_Os11g11020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTAATCAGTATCCTAGCCCAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATNTGTTCCAGTCACGGACGAGAGGGCATEST: gi|86867264|gb|CI337782.1|CI337782
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGCCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|33688862|gb|CF317101.1|CF317101
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAEST: gi|86544077|gb|CI184283.1|CI184283
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGG-AAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCA
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|87029420|gb|CI250353.1|CI250353
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|86854011|gb|CI252002.1|CI252002
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATGAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|89188271|gb|CI115520.1|CI115520
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|66919085|gb|CX105933.1|CX105933
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|88503479|gb|CI430985.1|CI430985
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATEST: gi|86477579|gb|CI120212.1|CI120212
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
EST: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGG GGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
genomic: GTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGgtaagaaagc ... gtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCAT
ggttcttttgcctttacgcagtgcattattgacacttcttgtggtgtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCACCTGTACAATAAATGACT
tattgac putative branch site (score: 29)
attattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcttgtacatcagtcatacaactatgacacatgttttgtctgagggttcttttgcctttacgcagtgcattattgacacttcttgtggtgtgtttgcagGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCACCTGTACAATAAATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -gtacatc
- - - - - - - -catacaa
- - - - - - - - - - - - - - -acatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttg