1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacaaattctaaacctaaatgacatttcttttgctttaacactttctaccctctacctctcttgaataacatgcaagttgcctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACACACACAAGAACATTGTTGTTAAATACAATGGTAACAGG
species | Oryza sativa |
transcript | LOC_Os11g07910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATAGATGATCTTCCATTATGGG GTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACAEST: gi|58667768|gb|CK056454.1|CK056454
genomic: TTCATAGATGATCTTCCATTATGGGgtaacaaatt ... ctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACA
EST: TTCATAGATGATCTTCCATTATGGG GTTTAGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTEST: gi|29623264|gb|CB628275.1|CB628275
genomic: TTCATAGATGATCTTCCATTATGGGgtaacaaatt ... ctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACT
EST: TTCATAGATGATCTTCCATTATGGG GTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACAEST: gi|29626345|gb|CB631356.1|CB631356
genomic: TTCATAGATGATCTTCCATTATGGGgtaacaaatt ... ctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACA
EST: TTCATAGATGATCTTCCATTATGGG GTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACA
genomic: TTCATAGATGATCTTCCATTATGGGgtaacaaatt ... ctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACA
taacactttctaccctctacctctcttgaataacatgcaagttgcctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACACACACAAGAACATTGTTGTTAAATACAATGGTAACAGG
gaataac putative branch site (score: 23)
ttgcctct putative PPT
ttgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaattctaaacctaaatgacatttcttttgctttaacactttctaccctctacctctcttgaataacatgcaagttgcctctgagcagGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACACACACAAGAACATTGTTGTTAAATACAATGGTAACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC