1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagatagttggcgaaatgtgattctgatgttcacaaccaaagtcacctgaatcctcattccaagatcttaacgtttatgtgtgtgttctcccatctgcagTTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGATGGCGAAGCGCGCCATTGAGCTCGCCGAGTCCAGGCTACTGAAGGACGG
species | Oryza sativa |
transcript | LOC_Os11g07440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGACCCGAAGAACACCCGGTGGAGTTATCACAATGGAGGATCATGGCCAG TTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGAEST: gi|86478196|gb|CI120829.1|CI120829
genomic: CGACCCGAAGAACACCCGGTGGAGTTATCACAATGGAGGATCATGGCCAGgttaaagttt ... ccatctgcagTTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGA
EST: CGACCCGAAGAACACCCGGTGGAGTTATCACAATGGAGGATCATGGCCAG TTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGA
genomic: CGACCCGAAGAACACCCGGTGGAGTTATCACAATGGAGGATCATGGCCAGgttaaagttt ... ccatctgcagTTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGA
cctgaatcctcattccaagatcttaacgtttatgtgtgtgttctcccatctgcagTTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGATGGCGAAGCGCGCCATTGAGCTCGCCGAGTCCAGGCTACTGAAGGACGG
tcttaac putative branch site (score: 2)
ttctcccatct putative PPT
atcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatagttggcgaaatgtgattctgatgttcacaaccaaagtcacctgaatcctcattccaagatcttaacgtttatgtgtgtgttctcccatctgcagTTCTCCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGGCGTCCGCAGATGGCGAAGCGCGCCATTGAGCTCGCCGAGTCCAGGCTACTGAAGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG