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gtaagggttctcttttcataacaagtgaataaccttgcaacattgtgttcattacttgtctaatatcaattgtttgcaaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTATACCATCAAAGGAAGCTGACATTGCTATTTTGGAAGAGCCTGAGCACC
species | Oryza sativa |
transcript | LOC_Os11g05990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAG TTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTEST: gi|29618609|gb|CB623621.1|CB623621
genomic: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttc ... caaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
EST: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAG TTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTEST: gi|157650451|gb|EX450085.1|EX450085
genomic: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttc ... caaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
EST: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAG TTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTEST: gi|29616236|gb|CB621248.1|CB621248
genomic: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttc ... caaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
EST: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAG TTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTEST: gi|29686800|gb|CB683075.1|CB683075
genomic: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttc ... caaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
EST: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAG TTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTEST: gi|29640788|gb|CB645795.1|CB645795
genomic: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttc ... caaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
EST: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAG TTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
genomic: AAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttc ... caaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTT
accttgcaacattgtgttcattacttgtctaatatcaattgtttgcaaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTATACCATCAAAGGAAGCTGACATTGCTATTTTGGAAGAGCCTGAGCACC
taatatcaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggttctcttttcataacaagtgaataaccttgcaacattgtgttcattacttgtctaatatcaattgtttgcaaagtatagTTTCAAAAAGAACGGAGAAGCATAATTCCTGCGGGGGACACTTCACAATTTATACCATCAAAGGAAGCTGACATTGCTATTTTGGAAGAGCCTGAGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA