1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catcataactgatcttctatgaagttctgatgtctattttaaattcattattggaattcttctgcacctaacataatggtggctcttttaccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAGAGGTTGTTGCAGATGGTGGGGCAGGCTCATCCAGAGAACATAAAATAC
species | Oryza sativa |
transcript | LOC_Os11g05930.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAEST: gi|58680467|gb|CK069154.1|CK069154
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCA
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAEST: gi|29661214|gb|CB657489.1|CB657489
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGA
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAEST: gi|29638597|gb|CB643606.1|CB643606
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCA
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAEST: gi|33678541|gb|CF306780.1|CF306780
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCA
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGT-ACCAEST: gi|5803459|gb|AI978429.1|AI978429
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCA
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAEST: gi|33674795|gb|CF303034.1|CF303034
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCA
EST: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAG AGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGT-ACCA
genomic: GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGgtgagcatgt ... ccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCA
cattattggaattcttctgcacctaacataatggtggctcttttaccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAGAGGTTGTTGCAGATGGTGGGGCAGGCTCATCCAGAGAACATAAAATAC
acctaac putative branch site (score: 32)
ctcttttacctt putative PPT
taacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcataactgatcttctatgaagttctgatgtctattttaaattcattattggaattcttctgcacctaacataatggtggctcttttaccttgatcagAGTTCTGGTAGCAAAAGGGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAGAGGTTGTTGCAGATGGTGGGGCAGGCTCATCCAGAGAACATAAAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggc