1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttaaggatagcaaaaactgatataactgaattctgaacttcagggatttgtacacatttatgccatccctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT
species | Oryza sativa |
transcript | LOC_Os11g04170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGATAATAGTGG GTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATAEST: gi|112787202|gb|EE592246.1|EE592246
genomic: AAGGATAATAGTGGgtaagttaag ... cctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATA
EST: GAAGAGCACCTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGG GTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATAEST: gi|87021466|gb|CI274073.1|CI274073
genomic: GAAGAGCACCTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGGgtaagttaag ... cctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATA
EST: GAAGAGCACCTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGG GTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATAEST: gi|89161528|gb|CI099500.1|CI099500
genomic: GAAGAGCACCTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGGgtaagttaag ... cctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATA
EST: GAAGAGCACCTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGG GTACATCACAAAGGAAGAGCTCGAGTAAGCCTTGAAGGAACAAGGGTTATA
genomic: GAAGAGCACCTTTACACGGCATTCCAGTACTTTGACAAGGATAATAGTGGgtaagttaag ... cctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATA
taactgaattctgaacttcagggatttgtacacatttatgccatccctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT
atataac putative branch site (score: 5)
ccatccctctt putative PPT
acatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaaggatagcaaaaactgatataactgaattctgaacttcagggatttgtacacatttatgccatccctcttgcagGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG