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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactatagtacctttccaaaaatattgacaggaatgtgtccatggcctattggcatttactttgtagtctgttccatctgctaaacaatttttaactcgtcttcgaatctatactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGTTACCACGAGATTCCTTCTTGGTGCTCTGAATGGATTGCTTGCACCAATA

Basic information

species Oryza sativa
transcript LOC_Os11g04030.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680054|gb|CB676329.1|CB676329
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|29674310|gb|CB670585.1|CB670585
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|29644401|gb|CB649408.1|CB649408
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|33677870|gb|CF306109.1|CF306109
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|29682083|gb|CB678358.1|CB678358
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|29679865|gb|CB676140.1|CB676140
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|88332574|gb|CI651734.1|CI651734
EST:     GCGGATCGTATGGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTT
EST: gi|88353644|gb|CI633035.1|CI633035
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTT
EST: gi|33678908|gb|CF307147.1|CF307147
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|29678070|gb|CB674345.1|CB674345
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|88303400|gb|CI669048.1|CI669048
EST:     GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCGGATCGTATTGGCCGAAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctgttccatctgctaaacaatttttaactcgtcttcgaatctatactttcagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGTTACCACGAGATTCCTTCTTGGTGCTCTGAATGGATTGCTTGCACCAATA
                        ttttaac  putative branch site (score: 2)
                                              tactttc  putative PPT
                taaacaatttttaact  TA-rich tract