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...ttccttttcaatcagtggttttgcctcctgaacccagagtgatggaatcaatcttttgtcaacatagttttttacttatgagcgatgcctgtgttttcagGCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATAAACGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACA
species | Oryza sativa |
transcript | LOC_Os11g03990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCGATCTGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAG GCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATAEST: gi|58673352|gb|CK062038.1|CK062038
genomic: TTGTGCGATCTGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGgtcgcattct ... gtgttttcagGCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATA
EST: TTGTGCGATCTGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAG GCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATA
genomic: TTGTGCGATCTGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGgtcgcattct ... gtgttttcagGCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATA
aatcaatcttttgtcaacatagttttttacttatgagcgatgcctgtgttttcagGCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATAAACGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACA
tgttttc CT-rich tract
atagttttttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttttcaatcagtggttttgcctcctgaacccagagtgatggaatcaatcttttgtcaacatagttttttacttatgagcgatgcctgtgttttcagGCCGAGAGGGCTACATGGAATTATATCGGCATTTTCAAGATTTGCAACATAAACGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - -cctcctg
- - - - - - - - - - - - - - - - - - - - - - gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - cttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgatgcc