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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtaaatcttgtaactaagatttcactgatcatataagcctttccttttcctgctagatataaccggtttcgtatctgtaactcgcagcatgcacacacacacacacacgcatttcattagaactttggcagctgctaagatgataacttcctgaatatcttctgcagAAAGTCTGGTGTATGACAGTTGCATTGTAACTTTGCATCTTCTGGTTCCAGGAAGTGTACTCACTTTTTTATCAATTGAGAAG

Basic information

species Oryza sativa
transcript LOC_Os10g42970.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88841019|gb|CI000981.1|CI000981
EST:     TTTCGAACTCAAAAGGCTTAAGCCTCAAAGACCAAGAAATTAATAAGAAT                         AAAGTCTGGTGTATGACAGTTGCATTGTAACTTTGCATCTTCTGGTTCCAG
genomic: TTTCGAACTCAAAAGGCTTAAGCCTCAAAGACCAAGAAATTAATAAGAATgtaattgtaa ... tcttctgcagAAAGTCTGGTGTATGACAGTTGCATTGTAACTTTGCATCTTCTGGTTCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattagaactttggcagctgctaagatgataacttcctgaatatcttctgcagAAAGTCTGGTGTATGACAGTTGCATTGTAACTTTGCATCTTCTGGTTCCAGGAAGTGTACTCACTTTTTTATCAATTGAGAAG
                            tgataac  putative branch site (score: 2)
                                           tatcttct  putative PPT
                                         aatatctt  TA-rich tract