1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttcctgctggaaataagaagctttggcggtttcagtatttgtttgctcagcgccaacttccaagaagtctgttaactaatcaattgcagtattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTTCATCTTCTCAGTTTTTTGGAGACCAGGCCAGTTTTGAAAAGGAGGCTC
species | Oryza sativa |
transcript | LOC_Os10g42420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTACAG ATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTEST: gi|58601898|gb|CK012426.1|CK012426
genomic: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAGgtaatgttta ... tattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATT
EST: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAG ATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTEST: gi|58695054|gb|CK083741.1|CK083741
genomic: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAGgtaatgttta ... tattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATT
EST: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAG ATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTEST: gi|218500046|gb|FG955203.1|FG955203
genomic: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAGgtaatgttta ... tattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATT
EST: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAG ATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTEST: gi|86594982|gb|CI258236.1|CI258236
genomic: TGGACAGTGGATATCACAAAAAATCTGCCCCTGGCCCATCCAAAGTGCAGgtaatgttta ... tattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATT
EST: CCCTGGCCCATCCAAAGTGCAG ATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATT
genomic: CCCTGGCCCATCCAAAGTGCAGgtaatgttta ... tattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATT
gctcagcgccaacttccaagaagtctgttaactaatcaattgcagtattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTTCATCTTCTCAGTTTTTTGGAGACCAGGCCAGTTTTGAAAAGGAGGCTC
aactaat putative branch site (score: 35)
tattctcc putative PPT
ttaactaatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctgctggaaataagaagctttggcggtttcagtatttgtttgctcagcgccaacttccaagaagtctgttaactaatcaattgcagtattctccagATTGAAGAAAGTAGTGAAGCAAGACAGAAGTTTTCAAATGCAAAGTCAATTTCATCTTCTCAGTTTTTTGGAGACCAGGCCAGTTTTGAAAAGGAGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- -cctgctg
- - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattgca