1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atggtattaattgtatgctttctctatattatggagtgagccactatctcatctctgaactatactgtactgtactgaccataaaccaacgatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCGAGGGCATTCTGCGAGCTAAGCTCAACAGATAGCCCCATGTCAGCGGCA
species | Oryza sativa |
transcript | LOC_Os10g42240.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTG GGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCEST: gi|29676981|gb|CB673256.1|CB673256
genomic: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTGgtgagactag ... gatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGC
EST: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTG GGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCEST: gi|218488436|gb|FG949757.1|FG949757
genomic: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTGgtgagactag ... gatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGC
EST: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTG GGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCEST: gi|313079820|gb|HO213259.1|HO213259
genomic: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTGgtgagactag ... gatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGC
EST: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTG GGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCEST: gi|86501786|gb|CI144419.1|CI144419
genomic: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTGgtgagactag ... gatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGC
EST: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTG GGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGC
genomic: GTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTGgtgagactag ... gatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGC
atctcatctctgaactatactgtactgtactgaccataaaccaacgatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCGAGGGCATTCTGCGAGCTAAGCTCAACAGATAGCCCCATGTCAGCGGCA
tactgac putative branch site (score: 32)
tttttc putative PPT
atttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtattaattgtatgctttctctatattatggagtgagccactatctcatctctgaactatactgtactgtactgaccataaaccaacgatttttcagGGATATTGTAACAAACTATGCGGACATATTATTCGCCAATGCCAATGAAGCGAGGGCATTCTGCGAGCTAAGCTCAACAGATAGCCCCATGTCAGCGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa