Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacagaaacacgggtcaactcgaacagcgaatttaacctgtgctatactgattcaaacttacttttacgacagCAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTG

Basic information

species Oryza sativa
transcript LOC_Os10g40030.6
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688731|gb|CK077418.1|CK077418
EST:     AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCAT                         CAATAACGCTGGAATCCTGTCCAATGACTGCATACGCTCCATTGACGGCCT
genomic: AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCATgtaagaacag ... tttacgacagCAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCT
EST: gi|29656760|gb|CB653035.1|CB653035
EST:     AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCAT                         CAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCT
genomic: AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCATgtaagaacag ... tttacgacagCAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCT
EST: gi|38471413|gb|CF955544.1|CF955544
EST:     AGGTTTGCCTCCGAGGTTGACTCTCTGAACCTACCTCTCAACATACTCAT                         CAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCT
genomic: AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCATgtaagaacag ... tttacgacagCAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCT
EST: gi|86885823|gb|CI295944.1|CI295944
EST:     AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCAT                         CAATAACGCTGGAATCCTGTACAAGGACTGCATACGCTCCATT
genomic: AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCATgtaagaacag ... tttacgacagCAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATT
EST: gi|58593021|gb|CF991329.1|CF991329
EST:     AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCAT                         CAATAACGCTGG
genomic: AGGTTTGCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCATgtaagaacag ... tttacgacagCAATAACGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgaacagcgaatttaacctgtgctatactgattcaaacttacttttacgacagCAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTG
                                     aacttac  putative branch site (score: 2)
                                       cttactttt  CT-rich tract
                                        ttactttta  TA-rich tract