1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgaacttctctatgatcatgtctttatttttttttctcaatatgctttagccttattattacgttaatgctgatgtttcacatattttctttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTG
species | Oryza sativa |
transcript | LOC_Os10g39760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|86503341|gb|CI145974.1|CI145974
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|88839048|gb|CI377972.1|CI377972
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|88323887|gb|CI561296.1|CI561296
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|88965060|gb|CI097928.1|CI097928
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|86494592|gb|CI137225.1|CI137225
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|87015700|gb|CI277658.1|CI277658
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|88247096|gb|CI246945.1|CI246945
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTTAAAGAAGAACCAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|88224591|gb|CI222771.1|CI222771
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|29618134|gb|CB623146.1|CB623146
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|88245707|gb|CI245556.1|CI245556
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|66920334|gb|CX107182.1|CX107182
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|29618136|gb|CB623148.1|CB623148
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGEST: gi|89192746|gb|CI050044.1|CI050044
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
EST: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAG TTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
genomic: TATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGgtactattgg ... tttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAG
ctttagccttattattacgttaatgctgatgtttcacatattttctttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTG
tgctgat putative branch site (score: 29)
tttcacatattttctt CT-rich tract
ttattattacgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaacttctctatgatcatgtctttatttttttttctcaatatgctttagccttattattacgttaatgctgatgtttcacatattttctttcttccagTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - ctctatg
- - - - - - - -atcatgt
- - - - - - - - - - - - - - - - - - - - -tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat