1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatgttcagtgaaaattttgcattttcaaagtagcaaggactgactagaataaaacaggaggaaccacagaatttatgagatgcttgtctgttcttccagGCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCGATCTTCTCAGTGGAAAGCGCATTCCTCCTACCCTT
species | Oryza sativa |
transcript | LOC_Os10g39670.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATG GCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCAEST: gi|58656973|gb|CK045653.1|CK045653
genomic: AAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATGgtacttgatt ... gttcttccagGCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCG
EST: ATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATG GCAGGGTCACGCTGGGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCEST: gi|33675246|gb|CF303485.1|CF303485
genomic: ATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATGgtacttgatt ... gttcttccagGCAGGGTCACACT-AGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATC
EST: AAGTTATAGTACAAACCTGGCATATACACCTTCACAATATCTGAGAAATG GCAGGGTCACACTACAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCGEST: gi|29664958|gb|CB661233.1|CB661233
genomic: AAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATGgtacttgatt ... gttcttccagGCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCG
EST: AAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATG GCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCA
genomic: AAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGAGAAATGgtacttgatt ... gttcttccagGCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCG
tagaataaaacaggaggaaccacagaatttatgagatgcttgtctgttcttccagGCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCGATCTTCTCAGTGGAAAGCGCATTCCTCCTACCCTT
cttgtctgttcttcc CT-rich tract
agaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttcagtgaaaattttgcattttcaaagtagcaaggactgactagaataaaacaggaggaaccacagaatttatgagatgcttgtctgttcttccagGCAGGGTCACACTAGAAAGTGTTGTATTCAGTTTTGGCACAATACTCATCGATCTTCTCAGTGGAAAGCGCATTCCTCCTACCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - -agtgaaaa
- - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccaca