1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgatcgtttcccccctttgtcattcttttgtttcatttttgctttgttgttccttaacctattaagtagatttgtttgcatattgtatacaacattacaactacaccatacagctactaaataatggattgcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
species | Oryza sativa |
transcript | LOC_Os10g38900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAG GATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGEST: gi|88233198|gb|CI233047.1|CI233047
genomic: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
EST: AGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAG GATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGEST: gi|86496516|gb|CI139149.1|CI139149
genomic: AGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
EST: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAG GATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGEST: gi|87031815|gb|CI272516.1|CI272516
genomic: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
EST: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAG GATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGEST: gi|88838417|gb|CI374965.1|CI374965
genomic: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
EST: TCTAATTACTTTTAGAAACAAG GATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGEST: gi|86434072|gb|CI094415.1|CI094415
genomic: TCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
EST: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAG GATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGEST: gi|86867644|gb|CI342645.1|CI342645
genomic: CTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
EST: CTGCTCAGGTTCTAATTACTTTTACAAACAAG GATACTATGGGCTTGCGATCTTTTGGTCCTGGTGGCAAGTTATTGCAG
genomic: CTGCTCAGTTTCTAATTACTTTTAGAAACAAGgtgatcgttt ... gcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
tatacaacattacaactacaccatacagctactaaataatggattgcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
tactaaa putative branch site (score: 10)
cacttcc putative PPT
tactaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcgtttcccccctttgtcattcttttgtttcatttttgctttgttgttccttaacctattaagtagatttgtttgcatattgtatacaacattacaactacaccatacagctactaaataatggattgcacttccagGATACTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG