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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggaattatgatttaggagtacagtttcaccagtgctatggacaaggatcatggtgagtcatgaactcatgatccttgtatccatgctgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtagGTAGGGGATTCAGCTGGCCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTT

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36780.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G082502_T02 (Zea mays), 3'ss of exon 3
gttaggaattatgatttaggagtacagtttcaccagtgctatggacaaggatcatggtgagtcatgaactcatgatccttgtatccatgctgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtagGTAGGGGATTCAGCTGGCCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTT
                                    |  |     |  ||   | |  ||| |  |  |  ||||    ||| |   || ||   ||||     | ||| ||  | |||    | || |     |  ||    ||| ||||||| || || |||||||||||||| |||||||||| |||||||||  |||||  ||| || || |||||||| ||| |||| || | ||| ||||||| | 
-------------------------------gttgatagtccactccgggcataggtggagacg-gcgcaaatgaattctgtctgtttgatgtacttct-----acccaattcaggtct--ccatatgt----gacagcctttattatgtagGTTGGAGAGTCAGCTGGCCCTGAGTGCAAAGCTGTCCTTCAGGAAATAACTGAACTCGTTGACGAACAGCTCCGGCTGGAGAGTCACTCGGTGAAGGCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtagGTAGGGGATTCAGCTGGCCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTT
                  atctgat  putative branch site (score: 4)
                       atgaaattttttgtat  TA-rich tract