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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT

Basic information

species Oryza sativa
transcript LOC_Os10g36650.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 4
gtaatgcaaaatcatccaacagttaattcttgatacactttctagat-tgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTA--TCTTTCATGAGAACCCCT
||||  | || |  |||  | | || ||||  ||  ||| |||   | | ||     | ||||| |||||| |||  |    ||||   ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||| ||  ||||||  ||  |||    ||  ||  |  
gtaacaccaagttttccggcggcta-ttctgtatctactatctgagtctattttgtgaagttct-gacataagttcttg---ttttccctgtgcagATGTGGATCTCAAGGGCTGAGTATGAGGAGTCTGGTCCAGCTATTGTCCACAGGAAGTGCTTCTAGACGTCACCTAGCCTTAATTCTCCTCTGGAAATAC--

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 4
-----------------------------------gtaatgcaaaatcatcc---aacagttaattcttgatacactttctaga-------ttgttcgagaaggttct-tgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGC-TGTATCTTTCATGAGAACCCCT
                                     |||  |   | ||     || |   |  ||  | ||   || |           || || | |||| | || ||||||    | | |  |||||   ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||| ||  |    | || |  |  | |     |    
gtaacaccaagtcttccgacggctgttctgtatccacaatctatgtttatttgtgaaaatgcacctcacggtagggttgcggagaaaaggtttatttgtgaagctactctgacattaagtccat--cttttccctgtgcagATGTGGATCTCAAGGGCTGAGTATGAGGAGTCTGGTCCAGCTATTGTCCACAGGAAGTGCTTCTAGACGTCACTCCTCGTGGAAATGCCTTTGTTTCATG-

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 4
--------------------------------gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttga---cat---atgttt-ctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT
                                  ||        |  ||| |       | |   |  |||| | ||     |  |  || || | ||   |||    ||||| ||||  | | || | |||||||||||||||| | ||  || ||||| |||||||| ||||||||||| ||  |||||||||||||  |  || | ||   |   |        |   | |
gtttgtactgatgttttttccccctcctattctcaacatcccccctcccacctcccccctttatgtgtacttacaagtaaaatgtattagtttatggaaagcattgagtgtttactttgttctcttatatgcagATGTGGATCTCTAAGGGCGAATATGATGAATCTGGGCCAGCTATCGTTCATCGGAAGTGCTTCTAAGTTGGGTCAAGAGCTGGATGGTGATCAAGTTCTT

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 4
gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttc--ttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTA-GCTGTATCTTTCA-TGAGAACCCCT
                      ||| ||  | ||  | |  ||   | ||  | |    ||   ||||    |          || |  || ||||||||||||| || |  | ||| ||||| || ||||||||| | || ||||||||||||||||||||  |      ||     |||  |||| ||   |     
------------------gtgattattttatcatgaattagctctttcgtgtgtgccattttcattgaatgctaaaaaaaatgttgtggttttgcagATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAATT--

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT
           | ||      ||| |||    ||   || |       ||     ||     ||||  ||    | |||   |||     ||||||||||||| || | || ||| ||||| || ||||| ||| | || ||||||||||||||||||||  |       |  ||  |   |  ||||      |
----------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttt-----tgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 3
gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTA-GCTGTATCTTTCA-TGAGAACCCCT
|| || |    |    ||  | |||  ||||   |    ||| |  ||  | ||     ||  | | | |||||          |  || ||||||||||||| || |  | ||| ||||| || ||||||||| | || ||||||||||||||||||||  |      ||     |||  |||| ||   |     
gtgattct---tttatcattaattagctcttc-catgtgttccattttcattga-----ttgctaaaaaatgttg---------tggttttgcagATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAAAT--

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 4
-----------------------gtaatgc--aaaatcatccaacagttaattctt----gatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT
                       |  || |  || |||  ||     ||  |||||    |  | |  |  ||| || |   ||   | | ||||  | |||  ||||  | | || | || ||||||||||||| | || ||| ||||| |||||||| ||||| ||||| ||  ||||||||||||| |  |||   |  |  | ||     | || |   |
gtttgtactgatgtttttttcctgctattctcaacatccccccctcatttgttcttacaagtaaaatgtattagtttatggaaggcaggtattga-gtgtgta-ctttgttctcttatatgtagATGTGGATCTCCAAGGGTGAATATGATGAATCTGGGCCAGCCATCGTTCATCGGAAGTGCTTCTAAAGTTGGGTCAAGTCGAGCTGGATGGTGATCAAGT

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA06G15520.1 (Glycine max), 3'ss of exon 4
gtaat-gcaaaatcatccaacagttaattctt-gatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT
|| || |   | |     |  | |||  |||| ||  ||  | | |  | | | ||        ||||  | |    | |   ||||  || ||||||||||||| |||| || ||| ||||| || ||||| ||| | |||||||||||||||||||||||  |       |  ||  |   |  ||||      |
gtgattgtttagtttattacaaattagctctttgacgcatgtgccaagtagattgaa------tttgaactctagaacatg--ttttggttttgcagATGTGGATTTCAAAGGGTGAATATGATGAGTCTGGTCCATCCATCGTCCACAGGAAGTGCTTCTAAGTCAAAAAGAAATGCTTTAATGGTGAGTTATGTT

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 4
gtaat-gcaaaatcatccaacagttaattctt-gatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT
|| || |   | |     |  | |||  |||| ||  ||  | | |  | | | ||        ||||  | |    | |   ||||  || ||||||||||||| |||| || ||| ||||| || ||||| ||| | |||||||||||||||||||||||  |       |  ||   |||| |||         
gtgattgtttagtttattacaaattagctctttgacgcatgtgccaagtagattgaa------tttgaactctagaacatg--ttttggttttgcagATGTGGATTTCAAAGGGTGAATATGATGAGTCTGGTCCATCCATCGTCCACAGGAAGTGCTTCTAAGTCAAAAAGAAATG---CTTTAATG---------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttg-tgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT--
          ||  ||  |   ||  || ||| |    |||  | || ||| ||     || |||    ||  |    | |||||| ||| | |||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||||||||||||||||   ||     |  ||  |   |  ||||  ||  |  
-------gtgattttc--attttttgtttttggt---ttttacaaatggtttgattcttttattgcatgatactaacatgctttttgttggtacagATGTGGATCTCAAAGGGTGAATATGATGAATCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA--GTAATACAAGTGCTTTGATGGTGAGTTCCTTTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596944|gb|CK007472.1|CK007472
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTGCGGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88487299|gb|CI424570.1|CI424570
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|58597406|gb|CK007934.1|CK007934
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCGAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88220560|gb|CI220120.1|CI220120
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCAGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86434564|gb|CI105797.1|CI105797
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88262321|gb|CI366095.1|CI366095
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88975281|gb|CI023532.1|CI023532
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88416389|gb|CI540930.1|CI540930
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88259405|gb|CI363698.1|CI363698
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86435344|gb|CI106577.1|CI106577
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86601026|gb|CI356783.1|CI356783
EST:     TGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: TGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88219572|gb|CI219132.1|CI219132
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86872425|gb|CI342049.1|CI342049
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88256097|gb|CI358485.1|CI358485
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86537179|gb|CI177385.1|CI177385
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|87026931|gb|CI259584.1|CI259584
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88510418|gb|CI437924.1|CI437924
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88225814|gb|CI225730.1|CI225730
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86593872|gb|CI260101.1|CI260101
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88722585|gb|CI746095.1|CI746095
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGACTATGAAGAATCTGGCCCAGCCATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88204714|gb|CI204563.1|CI204563
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88252052|gb|CI350480.1|CI350480
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88974208|gb|CI003025.1|CI003025
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88255388|gb|CI354212.1|CI354212
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86486601|gb|CI129234.1|CI129234
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88517093|gb|CI444747.1|CI444747
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|89167557|gb|CI108958.1|CI108958
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|87028123|gb|CI257283.1|CI257283
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86865209|gb|CI344659.1|CI344659
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|89197104|gb|CI021944.1|CI021944
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88506273|gb|CI433779.1|CI433779
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86434560|gb|CI105793.1|CI105793
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88221444|gb|CI221400.1|CI221400
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|38480521|gb|CF964610.1|CF964610
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86603362|gb|CI112122.1|CI112122
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|89177072|gb|CI111272.1|CI111272
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|58678325|gb|CK067012.1|CK067012
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86483357|gb|CI125990.1|CI125990
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88220307|gb|CI219867.1|CI219867
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCA--TCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88245764|gb|CI245613.1|CI245613
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|86434960|gb|CI106193.1|CI106193
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88502526|gb|CI430032.1|CI430032
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88503589|gb|CI431095.1|CI431095
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
EST: gi|88491018|gb|CI428290.1|CI428290
EST:     GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAG                         ATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC
genomic: GTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 59

GCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaa ... ttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT
                    tcttgac  putative branch site (score: 59)
                          catatgtttctttcct  CT-rich tract
                                         ttttttttgt  TA-rich tract