1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ataaatatttctacaaaccattgaaacttcatgcagcataattggttccatttctgcttgtgttgaacctctgcatctgattggccgttgcttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATCTTGGAGTTCAGGGCATAGGTATACCTATCGGTAAACTTGATGTTTATG
species | Oryza sativa |
transcript | LOC_Os10g35960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|86821774|gb|CI309240.1|CI309240
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCEST: gi|88592463|gb|CI710566.1|CI710566
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCC
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29664101|gb|CB660376.1|CB660376
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29671880|gb|CB668155.1|CB668155
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29624067|gb|CB629078.1|CB629078
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29656255|gb|CB652530.1|CB652530
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29687359|gb|CB683634.1|CB683634
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|88342733|gb|CI677737.1|CI677737
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|88386729|gb|CI682882.1|CI682882
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29624065|gb|CB629076.1|CB629076
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATEST: gi|29678813|gb|CB675088.1|CB675088
genomic: AGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
EST: CGATGATTTACAACTGGCCAGCCGAGAAG GTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
genomic: CGATGATTTACAACTGGCCAGCCGAGAAGgtacacctga ... cttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGAT
ttccatttctgcttgtgttgaacctctgcatctgattggccgttgcttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATCTTGGAGTTCAGGGCATAGGTATACCTATCGGTAAACTTGATGTTTATG
atctgat putative branch site (score: 4)
cttatttc putative PPT
ttatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaatatttctacaaaccattgaaacttcatgcagcataattggttccatttctgcttgtgttgaacctctgcatctgattggccgttgcttatttcagGTTGACATGATAGTTGTGACTGATGGGAGCCGTATTCTAGGTCTAGGTGATCTTGGAGTTCAGGGCATAGGTATACCTATCGGTAAACTTGATGTTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG