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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacaccgggatcccctctctggtttgtttgtgatgctatgtccatttgcattgatattattaccctgatcagTGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACATTCTCACAG

Basic information

species Oryza sativa
transcript LOC_Os10g35644.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29689642|gb|CB685917.1|CB685917
EST:     CTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG                         TGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACAT
genomic: CTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccgg ... ccctgatcagTGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggtttgtttgtgatgctatgtccatttgcattgatattattaccctgatcagTGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACATTCTCACAG
                               cattgat  putative branch site (score: 4)
                                          ttaccct  putative PPT
                                attgatattatta  TA-rich tract