1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attactgccatgtcctatgtggtgacctcttaattgaaaattttgatctctgacctgtgatctgtcagatggactgaaacctaccataaatctttgctagGAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGAGCAGTCATGCTACGGAGAAAATTTTACCCTGCTGCTATCAAATATCTAC
species | Oryza sativa |
transcript | LOC_Os10g32300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAG GAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGAEST: gi|55409402|gb|CV721778.1|CV721778
genomic: GTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAGgtaaatgtgc ... tctttgctagGAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGA
EST: GTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAG GAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGAEST: gi|702589|gb|D48880.1|D48880
genomic: GTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAGgtaaatgtgc ... tctttgctagGAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGA
EST: GTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAG GAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGA
genomic: GTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAGgtaaatgtgc ... tctttgctagGAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGA
atctctgacctgtgatctgtcagatggactgaaacctaccataaatctttgctagGAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGAGCAGTCATGCTACGGAGAAAATTTTACCCTGCTGCTATCAAATATCTAC
ctctgac putative branch site (score: 3)
tctttgct putative PPT
ataaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactgccatgtcctatgtggtgacctcttaattgaaaattttgatctctgacctgtgatctgtcagatggactgaaacctaccataaatctttgctagGAACAAGTGAGAAGTGGTGATGCAAGTGCTACTGAGTATTTTGAGCTTGGAGCAGTCATGCTACGGAGAAAATTTTACCCTGCTGCTATCAAATATCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- tactgcc
- - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccta