1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaaacgattttcgtctatatctgttacacttatgtttgttgaaacatgttgtggtcaaattacactgcctgctcacatgaagacttctttgctttgcagGATTGTGCTTCATGTCCAACGATTTC
species | Oryza sativa |
transcript | LOC_Os10g30640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGCTCCGGGGAATTTGGCCTGGATGTTGAAGATTACCTTACTG GATTGTGCTTCATGTCCAACGATTTCEST: gi|88908362|gb|CI090955.1|CI090955
genomic: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGgttagttttc ... tgctttgcagGATTGTGCTTCATGTCCAACGATTTC
EST: GGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG GATTGTGCTTCATGTCCAACGATTTCEST: gi|86422591|gb|CI060164.1|CI060164
genomic: GGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGgttagttttc ... tgctttgcagGATTGTGCTTCATGTCCAACGATTTC
EST: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG GATTGTGCTTCATGTCCAACGATTTCEST: gi|86423143|gb|CI060716.1|CI060716
genomic: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGgttagttttc ... tgctttgcagGATTGTGCTTCATGTCCAACGATTTC
EST: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG GATTGTGCTTCATGTCCAACGATTTCEST: gi|87005237|gb|CI283460.1|CI283460
genomic: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGgttagttttc ... tgctttgcagGATTGTGCTTCATGTCCAACGATTTC
EST: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG GATTGTGCTTCATGTCCAACGATTTCEST: gi|58686021|gb|CK074708.1|CK074708
genomic: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGgttagttttc ... tgctttgcagGATTGTGCTTCATGTCCAACGATTTC
EST: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG GATTGTGCTTCATGTCCAACGATTTC
genomic: TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGgttagttttc ... tgctttgcagGATTGTGCTTCATGTCCAACGATTTC
catgttgtggtcaaattacactgcctgctcacatgaagacttctttgctttgcagGATTGTGCTTCATGTCCAACGATTTC
tgctcac putative branch site (score: 6)
cttctttgctttgc putative PPT
tcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaacgattttcgtctatatctgttacacttatgtttgttgaaacatgttgtggtcaaattacactgcctgctcacatgaagacttctttgctttgcagGATTGTGCTTCATGTCCAACGATTTC
aaaaacga
- - - - - - - - - - -ctgttac
- - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - -catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatga