1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacacattatctgctgaaagtctctcaacctggctgcttactgtttaacatcatctcaattgagtttgacaagtttaaaaaattgatgcaattgatcttttgacaatctttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCATACCGCGAACGCTGTGCGAAGATGGGGATCCAATGGATGTGCTGGTCC
species | Oryza sativa |
transcript | LOC_Os10g26600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|88389669|gb|CI603168.1|CI603168
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|88391448|gb|CI598266.1|CI598266
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|88389431|gb|CI600600.1|CI600600
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|88405481|gb|CI588687.1|CI588687
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|12693435|gb|AU173568.1|AU173568
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|11564697|gb|AU165333.1|AU165333
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|11564695|gb|AU165331.1|AU165331
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCEST: gi|88404002|gb|CI601412.1|CI601412
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
EST: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAG GTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
genomic: AGGGGAGCAAAGTGAAGTATGAGCTTGACAAGAAGACTGGAATGATCAAGgtacacatta ... ttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTC
tttgacaagtttaaaaaattgatgcaattgatcttttgacaatctttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCATACCGCGAACGCTGTGCGAAGATGGGGATCCAATGGATGTGCTGGTCC
ttttgac putative branch site (score: 18)
tctttatc putative PPT
aagtttaaaaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacattatctgctgaaagtctctcaacctggctgcttactgtttaacatcatctcaattgagtttgacaagtttaaaaaattgatgcaattgatcttttgacaatctttatcactagGTTGACAGGGTGCTATACTCATCGGTGGTGTACCCGCACAACTACGGTTTCATACCGCGAACGCTGTGCGAAGATGGGGATCCAATGGATGTGCTGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG