1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagttcaattcttgctgctatttgttttgcttattagcatctttctcgctgaaagtttttctcgactatttgcagCTGCTTGGTCCTTGTCGCTTGCTGAAGCTTCGCCTTCGCCTTCCACCTGAAGTGGCGTCAGATTGACTGGACCGAAGATGCAGCGCTGTAGTCCCCACAG
species | Oryza sativa |
transcript | LOC_Os09g39462.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAGAATCGGCACAACATCTAATATGTGGATATTTATTCAGGACGTG CTGCTTGGTCCTTGTCGCTTGCTGAAGCTTCGCCTTCGCCTTCCACCTGAAEST: gi|58609649|gb|CK037682.1|CK037682
genomic: AGAAGAGAATCGGCACAACATCTAATATGTGGATATTTATTCAGGACGTGgttagttcaa ... ctatttgcagCTGCTTGGTCCTTGTCGCTTGCTGAAGCTTCGCCTTCGCCTTCCACCTGAA
EST: AGAAGAGAATCGGCACAACATCTAATATGTGGATATTTATTCAGGACGTG CTGCTTGGTCC
genomic: AGAAGAGAATCGGCACAACATCTAATATGTGGATATTTATTCAGGACGTGgttagttcaa ... ctatttgcagCTGCTTGGTCC
tttgttttgcttattagcatctttctcgctgaaagtttttctcgactatttgcagCTGCTTGGTCCTTGTCGCTTGCTGAAGCTTCGCCTTCGCCTTCCACCTGAAGTGGCGTCAGATTGACTGGACCGAAGATGCAGCGCTGTAGTCCCCACAG
aaagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttcaattcttgctgctatttgttttgcttattagcatctttctcgctgaaagtttttctcgactatttgcagCTGCTTGGTCCTTGTCGCTTGCTGAAGCTTCGCCTTCGCCTTCCACCTGAAGTGGCGTCAGATTGACTGGACCGAAGATGCAGCGCTGTAGTCCCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG