1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atttgccatatcaacctgtaatttttgtaatgctgattggttgctaggatattgacttggtgtatgttgtaaatctttctttatattttcattttggcagGGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGATTCGTTTGTCAATGGACCCTACTCACTATCAGTGCCCTCACCTCTCCGG
species | Oryza sativa |
transcript | LOC_Os09g39320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAAAAGTGATGATGCCACCTCCTGCCTCGTACGCTTTGGGCTTGAAAG GGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGAEST: gi|29621799|gb|CB626810.1|CB626810
genomic: TGCAAAAGTGATGATGCCACCTCCTGCCTCGTACGCTTTGGGCTTGAAAGgtacatgcct ... attttggcagGGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGA
EST: TGCAAAAGTGATGATGCCACCTCCTGCCTCGTACGCTTTGGGCTTGAAAG GGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGA
genomic: TGCAAAAGTGATGATGCCACCTCCTGCCTCGTACGCTTTGGGCTTGAAAGgtacatgcct ... attttggcagGGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGA
aggatattgacttggtgtatgttgtaaatctttctttatattttcattttggcagGGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGATTCGTTTGTCAATGGACCCTACTCACTATCAGTGCCCTCACCTCTCCGG
tattgac putative branch site (score: 2)
tctttctttatatttt putative PPT
ttgtaaatctttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgccatatcaacctgtaatttttgtaatgctgattggttgctaggatattgacttggtgtatgttgtaaatctttctttatattttcattttggcagGGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGATTCGTTTGTCAATGGACCCTACTCACTATCAGTGCCCTCACCTCTCCGG
- -tgccata
- - - - - - -acctgta
- - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg