Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG

Basic information

species Oryza sativa
transcript LOC_Os09g37910.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G162284_T03 (Zea mays), 3'ss of exon 4
----gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG
    | ||||||     ||    ||    | || |||| | |   || |  ||          | |||     |  ||    ||| |  |||        |||||| |||||||| | |||  | ||||| |||||||| |||| ||||||||| |||||||| |||||||| ||||||||||||
aagggttttgttcaacttgcatattcacttcaacgctccgatgcagtatacgtttgttc----ccttgcccgccctttgacgttgtgcagtttctgaatcgcagGAGAAGGCTCCCTACGTATCTAAGGCCGAGAAGCTGAAGGTTGAGTACACAAAGAAGATGGACGCCTATAACAACAAGCAG

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G066528_T02 (Zea mays), 3'ss of exon 5
-gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttac-atttgaggtgttgaaac------gatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG
 | |||     |||||  ||||||| ||  |||    ||  || || |  | |    ||  | || |      | ||  ||||| ||  ||  ||       |||||||| |||||||| | |||| | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
tgcttttaacgctctgatgtttgtt-tgtgtgc---atttatgattgaaacta----gtaatgtgatggaacatcaccgtttgacgtagtgcgactcttcaaatgcagGAGAAGGCTCCCTACGTGTCTAAGGCAGAGAAGCTCAAGGCTGAGTACACCAAGAAGATCGACGCTTACAACAACAAGCAG

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G066528_T01 (Zea mays), 3'ss of exon 5
-gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttac-atttgaggtgttgaaac------gatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG-----
 | |||     |||||  ||||||| ||  |||    ||  || || |  | |    ||  | || |      | ||  ||||| ||  ||  ||       |||||||| |||||||| | |||| | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||     
tgcttttaacgctctgatgtttgtt-tgtgtgc---atttatgattgaaacta----gtaatgtgatggaacatcaccgtttgacgtagtgcgactcttcaaatgcagGAGAAGGCTCCCTACGTGTCTAAGGCAGAGAAGCTCAAGGCTGAGTACACCAAGAAGATCGACGCTTACAACAACAAGCAGGTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33663559|gb|CF294526.1|CF294526
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33664242|gb|CF295209.1|CF295209
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33684508|gb|CF312747.1|CF312747
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86256064|gb|CI007780.1|CI007780
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33677032|gb|CF305271.1|CF305271
EST:     ATTGACAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86432557|gb|CI086168.1|CI086168
EST:     AAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: AAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33677015|gb|CF305254.1|CF305254
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|89176361|gb|CI043382.1|CI043382
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|66947180|gb|AU312024.1|AU312024
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88237036|gb|CI236885.1|CI236885
EST:     GTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: GTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86527793|gb|CI167999.1|CI167999
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33664894|gb|CF295861.1|CF295861
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33655503|gb|CF278117.1|CF278117
EST:     AGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: AGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86254444|gb|CI059171.1|CI059171
EST:     GACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: GACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|109712974|gb|CI105582.1|CI105582
EST:     AGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: AGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33655324|gb|CF277938.1|CF277938
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|94362993|gb|CI053154.1|CI053154
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|89180836|gb|CI009744.1|CI009744
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|163926642|gb|EG713658.1|EG713658
EST:     GGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: GGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33653913|gb|CF276527.1|CF276527
EST:     AGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: AGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88986566|gb|CI033709.1|CI033709
EST:     TGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: TGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88962196|gb|CI097349.1|CI097349
EST:     TGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: TGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33657650|gb|CF280264.1|CF280264
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86488849|gb|CI131482.1|CI131482
EST:     CAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33659198|gb|CF281811.1|CF281811
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|89171274|gb|CI040551.1|CI040551
EST:     AGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACTAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: AGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86253064|gb|CI057989.1|CI057989
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86415474|gb|CI029485.1|CI029485
EST:     GGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: GGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88964072|gb|CI032989.1|CI032989
EST:     GGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: GGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33657164|gb|CF279778.1|CF279778
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|13896450|gb|AU182786.1|AU182786
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|86517396|gb|CI157602.1|CI157602
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33659824|gb|CF282437.1|CF282437
EST:     CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33680144|gb|CF308383.1|CF308383
EST:     ATTGGTAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|88979044|gb|CI025558.1|CI025558
EST:     GATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: GATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|33656519|gb|CF279133.1|CF279133
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: gi|32947912|gb|BP184484.1|BP184484
EST:     ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT                         GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 45 (upstream exon), 75 (downstream exon)
Score: 207

ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG
                        ctcttac  putative branch site (score: 207)
               tttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttgttgtctctgtcgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgtttagctcttacatttgaggtgttgaaacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG