1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggagtctatttcagtttttacagtatcatgtataccatgataatgctgaaatatggataatagttttcccccacttatcgatcgtaattcctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTT
species | Oryza sativa |
transcript | LOC_Os09g36800.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCEST: gi|11026098|gb|AU162699.1|AU162699
genomic: AAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
EST: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCEST: gi|38483247|gb|CF967049.1|CF967049
genomic: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
EST: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCEST: gi|25798307|gb|CA754268.1|CA754268
genomic: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
EST: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCEST: gi|58602132|gb|CK012660.1|CK012660
genomic: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
EST: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCEST: gi|218479549|gb|FG949471.1|FG949471
genomic: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
EST: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCEST: gi|218496360|gb|FG958514.1|FG958514
genomic: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
EST: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAG AGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
genomic: GCACCGTTCTTTGAATGGCAAGAGAAAAACATGCCAGCATTATTAGCAAGgtattgagca ... ctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGC
ctgaaatatggataatagttttcccccacttatcgatcgtaattcctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTT
ttcctactt CT-rich tract
ataatagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagtctatttcagtttttacagtatcatgtataccatgataatgctgaaatatggataatagttttcccccacttatcgatcgtaattcctacttgtagAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGAAAACAAAGCTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - -catgata
- - - - - - - - - - - - - - - - - - - - - -tgctgaa