Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtgcaaaatgtgcacccctcctgtgtcttccttaaataactgttaatagcttagttaaaggactgttatttatactgtcttcatctcatatcttctagAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTG

Basic information

species Oryza sativa
transcript LOC_Os09g36530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36530.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G103458_T01 (Zea mays), 3'ss of exon 4
-------------------------------------tagtgcaaaatgtg-cacccctcctgtgtcttccttaaataactgttaatagcttagttaaaggactgttatttatactgtcttcatctcatatcttctagAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTG
                                     |  || | ||| |  || |   | | | |||| |   |||   | || ||    ||  |  | |  | || |   |  | | |||  |  ||| |   |||| ||||||||||| | | ||||||||||| || |||||||| ||||||||||||||||||||||| ||| |||| ||||| |||||||| ||   |||||
gtacttgagtgtgtctctgctgcctaataagtatctttcatggagaatatttcaacaaacttctatctttcc--aatgcttattgattatatatatttatgcttcttgtacttgtttttttc--ccaataccccttagAAAAGATGGGAACGTCTATTGGCTCTTGGAAAGAGAGTTTTTGTTGTTGGTGATTTGAATATTGCTCCTGCTTCTATAGACAGGTGTGACGCGGCACCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatagcttagttaaaggactgttatttatactgtcttcatctcatatcttctagAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTG
 tgttaat  putative branch site (score: 3)
                                             tatcttct  putative PPT
                    tgttatttata  TA-rich tract