1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atagtctttatatccttagcagtagggactgtcgttattatgctgagttcagatctgttcgctgttgttcgtggactgaattttggatcccctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATTTACTGGAATATAAGCAGCCAATGGGAAGGCATTTCTCCAAGCCTGACC
species | Oryza sativa |
transcript | LOC_Os09g36220.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCACACCAACAATEST: gi|33676452|gb|CF304691.1|CF304691
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|29670836|gb|CB667111.1|CB667111
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|33676098|gb|CF304337.1|CF304337
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|2428269|gb|C72732.1|C72732
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|58664572|gb|CK053258.1|CK053258
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAEST: gi|29638275|gb|CB643284.1|CB643284
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGA
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|33798193|gb|CF324956.1|CF324956
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: GTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|29679591|gb|CB675866.1|CB675866
genomic: GTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAATAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGACAGAACTGGAGGCTGACAGTACGCAAACCAACAATEST: gi|29679636|gb|CB675911.1|CB675911
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|33675681|gb|CF303920.1|CF303920
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATEST: gi|29625624|gb|CB630635.1|CB630635
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
EST: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCACACCAACAAT
genomic: ATGTTGTCCACAAGAACATGGAATGCAGTGAACAAGAAAGTGATGCTCAAgtaagtttta ... cctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAAT
agttcagatctgttcgctgttgttcgtggactgaattttggatcccctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATTTACTGGAATATAAGCAGCCAATGGGAAGGCATTTCTCCAAGCCTGACC
tcccctcttgc CT-rich tract
tgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtctttatatccttagcagtagggactgtcgttattatgctgagttcagatctgttcgctgttgttcgtggactgaattttggatcccctcttgcagAGTTCATGTACAAGGTCAGAACTGGAGGCTGACAGTAGGCAAACCAACAATTTACTGGAATATAAGCAGCCAATGGGAAGGCATTTCTCCAAGCCTGACC
- - - - - - - - - gcagtag
- - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatcc