1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgactactgaattgtcctacataacatccaaatatgaaatgcaggaacattgactaactaaactctgaacattatattgtacttatttacttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGGTACGGCGATCGGTATCCTCAACGGATACACCATCGAGGATCATCGTTGC
species | Oryza sativa |
transcript | LOC_Os09g36060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAATGTTTCGGTTGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAG GCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGGEST: gi|87027237|gb|CI278269.1|CI278269
genomic: GAAATGTTTCGGTTGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAGgtagtacctc ... ttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGG
EST: GAAATGTTTCGGTTGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAG GCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGGEST: gi|88223969|gb|CI223818.1|CI223818
genomic: GAAATGTTTCGGTTGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAGgtagtacctc ... ttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGG
EST: GTTTCGGTTGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAG GCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGGEST: gi|86502072|gb|CI144705.1|CI144705
genomic: GTTTCGGTTGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAGgtagtacctc ... ttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGG
EST: TGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAG GCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGG
genomic: TGGTCCTGCCACTCTTCAGCAGCTAGCCAGAAAGCAGgtagtacctc ... ttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGG
aacattgactaactaaactctgaacattatattgtacttatttacttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGGTACGGCGATCGGTATCCTCAACGGATACACCATCGAGGATCATCGTTGC
tttactt CT-rich tract
aacattatattgtact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgactactgaattgtcctacataacatccaaatatgaaatgcaggaacattgactaactaaactctgaacattatattgtacttatttacttatttgcagGCTGATTATATATTAGGAGATAACCCGATGAAAATGTCATACATGGTCGGGTACGGCGATCGGTATCCTCAACGGATACACCATCGAGGATCATCGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- actactg
- - - - - - - tcctaca
- - - - - - - - - - - - catccaa
- - - - - - - - - - - - - - - - - - - atgcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaca