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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacacgcacgcacgcacgcacggttaactccaaaaacaacgcatttgtttaagctgtgtactgacgcaatgcaatccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAAC

Basic information

species Oryza sativa
transcript LOC_Os09g35760.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g35760.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G116658_T01 (Zea mays), 3'ss of exon 4
------------------------gtacac-acgcacgcacgcacgcacggttaactccaaaaacaacgcatttgtttaagctgt----gtactgacgca-------atgcaatccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAAC
                         || || |  ||||    |  |   | |  | |||  |     |||       |   |||         ||||  |       |  ||     ||  ||| | |||||||||||||||||||||||| | |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |
gtacgtacgcacgcacctcctcctatatactagacacgtgtacgtgtcagttccattccgtacgtgccgctgcgccatgcactggcacgacggtgacatacatacatacacatgtttcgtgcagGCTCGGTGGTCGGAGATGTTCCCGTGCATCGTGGCGAGGGCGAGCACGACGGACATCATCTCGAGCGGCATGGGCGGCACGCGCAGCGGGTCAATCCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672521|gb|CK061207.1|CK061207
EST:     GCATCGCCATCATCAGCAGCGTCGACCTCGTCGACAGCCTCATGGACGCG                         CCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACG
genomic: GCATCGCCATCATCAGCAGCGTCGACCTCGTCGACAGCCTCATGGACGCGgtacacacgc ... ccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaacaacgcatttgtttaagctgtgtactgacgcaatgcaatccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAAC
                            tactgac  putative branch site (score: 1)
            atttgtttaa  TA-rich tract