Sequence
atgc intronic sequence ATGC exonic sequencegtacacacgcacgcacgcacgcacggttaactccaaaaacaacgcatttgtttaagctgtgtactgacgcaatgcaatccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAAC
Basic information
species | Oryza sativa |
transcript | LOC_Os09g35760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os09g35760.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G116658_T01 (Zea mays), 3'ss of exon 4
------------------------gtacac-acgcacgcacgcacgcacggttaactccaaaaacaacgcatttgtttaagctgt----gtactgacgca-------atgcaatccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAAC
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gtacgtacgcacgcacctcctcctatatactagacacgtgtacgtgtcagttccattccgtacgtgccgctgcgccatgcactggcacgacggtgacatacatacatacacatgtttcgtgcagGCTCGGTGGTCGGAGATGTTCCCGTGCATCGTGGCGAGGGCGAGCACGACGGACATCATCTCGAGCGGCATGGGCGGCACGCGCAGCGGGTCAATCCAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58672521|gb|CK061207.1|CK061207EST: GCATCGCCATCATCAGCAGCGTCGACCTCGTCGACAGCCTCATGGACGCG CCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACG
genomic: GCATCGCCATCATCAGCAGCGTCGACCTCGTCGACAGCCTCATGGACGCGgtacacacgc ... ccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaaacaacgcatttgtttaagctgtgtactgacgcaatgcaatccgcggccagCCACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAAC
tactgac putative branch site (score: 1)
atttgtttaa TA-rich tract