Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacagtgctttctaatatttcattccagaacatttaattctttgttgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC

Basic information

species Oryza sativa
transcript LOC_Os09g32680.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g32680.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G408242_T01 (Zea mays), 3'ss of exon 1
cacagtgctttctaatatttcattccagaacatttaattctttgttgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC
|  |      |  |||  ||  ||| ||            ||| ||| |   | | ||   |   | |||| |||||| | |  |   ||  |||| ||| ||||||||| | || |||||||||||| |||| ||||| || ||||||||||||||||| |||                                    
ctgaaaaacattgaattatttgttctagtggggccttgaattttttgtatgtgtatattttgtagtgagaactttgttttaacacaaaattcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAG------------------------------------

upper sequence: LOC_Os09g32680.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G408242_T03 (Zea mays), 3'ss of exon 4
cacagtgctttctaatatttcattccagaacatttaattctttgttgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC
|  |      |  |||  ||  ||| ||            ||| ||| |   | | ||   |   | |||| |||||| | |  |   ||  |||| ||| ||||||||| | || |||||||||||| |||| ||||| || ||||||||||||||||| |||||||| ||||| |||||||||||  |||||||||| 
ctgaaaaacattgaattatttgttctagtggggccttgaattttttgtatgtgtatattttgtagtgagaactttgttttaacacaaaattcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTA

upper sequence: LOC_Os09g32680.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA18G33140.1 (Glycine max), 3'ss of exon 4
cacagtgctttctaatatttcattccagaacatttaat---tctttgttgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC
 | | | || |||  | | | |  |  |||  | || |   |   |  |  | |     | |||| | | |     |   | |  |  |   |   |||  || ||||| ||||||||||||||||| ||| ||||||| ||||| || |||||  |||||||||| |  ||||| ||||||||||| ||  | |||||||| 
-ataatactatcttct-tctgaccctggaagttgtagtatatgcctaataaacttccttaacaag-tgtcaactgatgactatcttcattttttcatttgaagGAAGAGTATGACTGAATATGATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTA

upper sequence: LOC_Os09g32680.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G46170.2 (Glycine max), 3'ss of exon 5
-cacagtgctttctaatatttcattccagaacatttaattctttgttgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC
  | | |   |||   |    |    |  |  | |  || | |  |     |     | |||| | | |     |   | |  |  |   |   |||  || ||||| ||| ||||||||||||| ||  ||||||| ||||| || |||||  |||||||||| |  ||||| ||||||||||| ||  | |||||||| 
ttatactatcttcgtctgaccctgaacgtagtagtatatgcctaataaacttcccttaacaag-tgtcaactgatgactatcttcattttttcatttgaagGAAGAGTATGGCTGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88672189|gb|CI726305.1|CI726305
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|218486157|gb|FG964429.1|FG964429
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|38568817|gb|CD671032.1|CD671032
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88573905|gb|CI665674.1|CI665674
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|87024052|gb|CI291705.1|CI291705
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCG
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCG
EST: gi|88670127|gb|CI724243.1|CI724243
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88761182|gb|CI770738.1|CI770738
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCA
EST: gi|88345571|gb|CI629832.1|CI629832
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88672567|gb|CI726683.1|CI726683
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88313296|gb|CI594926.1|CI594926
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88309145|gb|CI654764.1|CI654764
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88694968|gb|CI739006.1|CI739006
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGT
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGT
EST: gi|88390329|gb|CI607365.1|CI607365
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88909071|gb|CI718379.1|CI718379
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGAC
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGAC
EST: gi|88826715|gb|CI777280.1|CI777280
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAA
EST: gi|88368731|gb|CI645189.1|CI645189
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88828064|gb|CI778629.1|CI778629
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTG
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTG
EST: gi|88387197|gb|CI580542.1|CI580542
EST:     GGTGATAGCTACTGGTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88306131|gb|CI636509.1|CI636509
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88332007|gb|CI642232.1|CI642232
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|58688702|gb|CK077389.1|CK077389
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88360541|gb|CI608393.1|CI608393
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88372851|gb|CI640302.1|CI640302
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88739887|gb|CI761397.1|CI761397
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88571405|gb|CI662778.1|CI662778
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88389465|gb|CI600634.1|CI600634
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88574567|gb|CI666336.1|CI666336
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88362226|gb|CI608617.1|CI608617
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88958928|gb|CI685739.1|CI685739
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTG
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTG
EST: gi|88669768|gb|CI723884.1|CI723884
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTC
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTC
EST: gi|88741845|gb|CI764350.1|CI764350
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88290448|gb|CI665237.1|CI665237
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88377693|gb|CI605528.1|CI605528
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88300294|gb|CI584713.1|CI584713
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCAC-AACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88395660|gb|CI590675.1|CI590675
EST:     GGTGATAGCTAGTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|58598688|gb|CK009216.1|CK009216
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|58657666|gb|CK046346.1|CK046346
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTA
EST: gi|88360472|gb|CI608398.1|CI608398
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTCTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88351442|gb|CI627458.1|CI627458
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88828105|gb|CI778670.1|CI778670
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAG
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAG
EST: gi|29660227|gb|CB656502.1|CB656502
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88671988|gb|CI726104.1|CI726104
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88320137|gb|CI644729.1|CI644729
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88576455|gb|CI670600.1|CI670600
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTNTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88739870|gb|CI761380.1|CI761380
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCAC
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCAC
EST: gi|88594716|gb|CI714674.1|CI714674
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACT
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACT
EST: gi|88430967|gb|CI571957.1|CI571957
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|218483409|gb|FG950971.1|FG950971
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|218503593|gb|FG957186.1|FG957186
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88594838|gb|CI714796.1|CI714796
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATA
EST: gi|88673257|gb|CI726032.1|CI726032
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88590333|gb|CI709179.1|CI709179
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCT
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCT
EST: gi|88300562|gb|CI587366.1|CI587366
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCAC-AACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88737852|gb|CI760991.1|CI760991
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88743374|gb|CI766882.1|CI766882
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|58592302|gb|CF990610.1|CF990610
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88743467|gb|CI766975.1|CI766975
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATAT
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATAT
EST: gi|88396093|gb|CI595641.1|CI595641
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|58601384|gb|CK011912.1|CK011912
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88972652|gb|CI717378.1|CI717378
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATAT
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATAT
EST: gi|88303299|gb|CI668947.1|CI668947
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|27547661|gb|CA765583.2|CA765583
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATAGGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|58694573|gb|CK083260.1|CK083260
EST:     GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
EST: gi|88300050|gb|CI580111.1|CI580111
EST:     GGTGATAGCTAGTGCTGTTACTTATTTCAGGCGTGTATACACAAG                         AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA
genomic: GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 45 (upstream exon), 75 (downstream exon)
Score: 47

GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGgtatgattct ... atgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC
                               ttctgat  putative branch site (score: 47)
                  tattagaattttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacagtgctttctaatatttcattccagaacatttaattctttgttgcagtggaacatcaagctattagaattttgttctgatgctggatatgtttacagAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - -tgctttc
- - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - -ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctg