1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agggagctgctgcaatgctatattttttctagtcgggactttttcactacatatgtaatatatctgatctgatctggtgttgttatgttccggcctgcagGTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGCCAGCCAGCAAATCCGATGAGGACGATGATGACAGCGAGCTTTAGATAGC
species | Oryza sativa |
transcript | LOC_Os09g32526.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTG GTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGCEST: gi|86509969|gb|CI152602.1|CI152602
genomic: CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTGgtatgtcgtt ... cggcctgcagGTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGC
EST: CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTG GTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGCEST: gi|2799478|gb|AA752467.1|AA752467
genomic: CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTGgtatgtcgtt ... cggcctgcagGTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGC
EST: CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTG GTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGT
genomic: CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTGgtatgtcgtt ... cggcctgcagGTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGT
actacatatgtaatatatctgatctgatctggtgttgttatgttccggcctgcagGTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGCCAGCCAGCAAATCCGATGAGGACGATGATGACAGCGAGCTTTAGATAGC
atctgat putative branch site (score: 19)
atatgtaatatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggagctgctgcaatgctatattttttctagtcgggactttttcactacatatgtaatatatctgatctgatctggtgttgttatgttccggcctgcagGTGGAGCGACTCTCATTTTCGATACCGAGCTTGTTGCTGTCAATGGCGAGCCAGCCAGCAAATCCGATGAGGACGATGATGACAGCGAGCTTTAGATAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - -catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt