1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctagctagtcttgtctgagactgagacataatcaatcaaatactgtaatactgtatcatccaagttgctgacggtgttcttgttcttgattcatctgaagGTGTTAAACGACAGCCGTTCCAGCTGCACCTGCTCGGCGAGCAAGCAGAAGCACTTCGCCGGCTAAATCAATCAAGTCAATCAATCGCCATGACCGGTGC
species | Oryza sativa |
transcript | LOC_Os09g31300.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAGEST: gi|86506519|gb|CI149152.1|CI149152
genomic: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAG-A--A-G-C-AGgtcaaggtaa ... tcatc
EST: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAGEST: gi|29669314|gb|CB665589.1|CB665589
genomic: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAG-A--A-G-C-AGgtcaaggtaa ... tcatc
EST: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAGEST: gi|29657039|gb|CB653314.1|CB653314
genomic: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAG-A--A-G-C-AGgtcaaggtaa ... tcatc
EST: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAGEST: gi|29669315|gb|CB665590.1|CB665590
genomic: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAG-A--A-G-C-AGgtcaaggtaa ... tcatc
EST: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAG
genomic: CTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAG-A--A-G-C-AGgtcaaggtaa ... tcatc
taatactgtatcatccaagttgctgacggtgttcttgttcttgattcatctgaagGTGTTAAACGACAGCCGTTCCAGCTGCACCTGCTCGGCGAGCAAGCAGAAGCACTTCGCCGGCTAAATCAATCAAGTCAATCAATCGCCATGACCGGTGC
ttcatct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagctagtcttgtctgagactgagacataatcaatcaaatactgtaatactgtatcatccaagttgctgacggtgttcttgttcttgattcatctgaagGTGTTAAACGACAGCCGTTCCAGCTGCACCTGCTCGGCGAGCAAGCAGAAGCACTTCGCCGGCTAAATCAATCAAGTCAATCAATCGCCATGACCGGTGC
- - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac