1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattgattccttcatgttactgatttaaataagttttatttctaggactgtatatttatttgtctcataaaactgctcactatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGA
species | Oryza sativa |
transcript | LOC_Os09g20630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|88830790|gb|CI079224.1|CI079224
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|88224673|gb|CI224522.1|CI224522
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|86504754|gb|CI147387.1|CI147387
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: CAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|88848560|gb|CI087082.1|CI087082
genomic: CAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|88481784|gb|CI419055.1|CI419055
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|89188659|gb|CI115908.1|CI115908
genomic: AGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|86887121|gb|CI325936.1|CI325936
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|88269771|gb|CI381069.1|CI381069
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: TATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|58681671|gb|CK070358.1|CK070358
genomic: TATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTTCTGAAGGTGAAGAAGATCATGAAGACTAATTCTGTGGGCTGAATGCTEST: gi|86419025|gb|CI053826.1|CI053826
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagA-TTCTGAAGGTGAAGAAGATCATGAAGACTAA-TCTGTGGGCTGAATGCT
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|89176659|gb|CI111375.1|CI111375
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: TATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|88248279|gb|CI248128.1|CI248128
genomic: TATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAEST: gi|86503112|gb|CI145745.1|CI145745
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
EST: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTG ATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
genomic: AGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattgatt ... tatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTA
ttatttctaggactgtatatttatttgtctcataaaactgctcactatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGA
tgctcac putative branch site (score: 2)
tatatttatttgtctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgattccttcatgttactgatttaaataagttttatttctaggactgtatatttatttgtctcataaaactgctcactatcaaacagATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA