1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgcttatgtctttccctatatttgcaaatgtttgcaccaaatgcttagctgattgcaatcatatatatcaattgcagCTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGGAGCATAATTTTACTTAGGTACTTCAATCCTGTTGGAGCTCATCCCAGTG
species | Oryza sativa |
transcript | LOC_Os09g15420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCACAGAAGAGTTTCCTCTCACTCCACACAATCCATATGGCAGAACCAAG CTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGGEST: gi|58675924|gb|CK064611.1|CK064611
genomic: GCACAGAAGAGTTTCCTCTCACTCCACACAATCCATATGGCAGAACCAAGgtgtgcttat ... tcaattgcagCTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGG
EST: GCACAGAAGAGTTTCCTCTCACTCCACACAATCCATATGGCAGAACCAAG CTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGG
genomic: GCACAGAAGAGTTTCCTCTCACTCCACACAATCCATATGGCAGAACCAAGgtgtgcttat ... tcaattgcagCTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGG
tgcaaatgtttgcaccaaatgcttagctgattgcaatcatatatatcaattgcagCTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGGAGCATAATTTTACTTAGGTACTTCAATCCTGTTGGAGCTCATCCCAGTG
agctgat putative branch site (score: 10)
aatcatatatatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcttatgtctttccctatatttgcaaatgtttgcaccaaatgcttagctgattgcaatcatatatatcaattgcagCTCATAGCAGAGGAGATTTGCCGTGATATATACCATTCAGATTCTGAATGGAGCATAATTTTACTTAGGTACTTCAATCCTGTTGGAGCTCATCCCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA