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gtaaggttcttaggctaaaaacctaaagtgcacttttcttcaagcatgtttgtgttgatcttctcattattcaaatgttttatctttctgagtcttagtggaccagaactcactgaaggaccttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCATCAAAGAAGGTCACAAGAGCTTTCCAAGCGGGCACTCTTCAT
species | Oryza sativa |
transcript | LOC_Os09g13870.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|29642303|gb|CB647310.1|CB647310
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|88691322|gb|CI733906.1|CI733906
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|29640276|gb|CB645285.1|CB645285
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|29642638|gb|CB647645.1|CB647645
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|29671233|gb|CB667508.1|CB667508
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|300215590|gb|HO088216.1|HO088216
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|88691866|gb|CI733443.1|CI733443
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCEST: gi|88690889|gb|CI734968.1|CI734968
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
EST: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGAT GTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
genomic: GTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATgtaaggttct ... ttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTC
ttttatctttctgagtcttagtggaccagaactcactgaaggaccttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCATCAAAGAAGGTCACAAGAGCTTTCCAAGCGGGCACTCTTCAT
aactcac putative branch site (score: 2)
ccttctttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttcttaggctaaaaacctaaagtgcacttttcttcaagcatgtttgtgttgatcttctcattattcaaatgttttatctttctgagtcttagtggaccagaactcactgaaggaccttctttccagGTTTATGATAATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCATCAAAGAAGGTCACAAGAGCTTTCCAAGCGGGCACTCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT