1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaagctctattgaagatctgttagttttaagattttcattgtaatcaggaatacattgtccaacacacaatagttgactatttcattttcccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAA
species | Oryza sativa |
transcript | LOC_Os09g12750.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAG GTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACEST: gi|88242382|gb|CI242231.1|CI242231
genomic: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGgtaactttga ... ccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
EST: ACGAAGACTGCATGAACAAGTGGAG GTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACEST: gi|86823500|gb|CI256440.1|CI256440
genomic: ACGAAGACTGCATGAACAAGTGGAGgtaactttga ... ccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
EST: GAAATGCAACGAAGACGGCATGAACAAGTGGAG GTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACEST: gi|86593173|gb|CI255635.1|CI255635
genomic: GAAATGCAACGAAGACTGCATGAACAAGTGGAGgtaactttga ... ccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
EST: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAG GTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACEST: gi|87026973|gb|CI259626.1|CI259626
genomic: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGgtaactttga ... ccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
EST: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAG GTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACEST: gi|66924931|gb|CX111779.1|CX111779
genomic: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGgtaactttga ... ccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
EST: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAG GTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
genomic: CATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGgtaactttga ... ccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGAC
caggaatacattgtccaacacacaatagttgactatttcattttcccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAA
agttgac putative branch site (score: 4)
ctatttcattttccc CT-rich tract
tatttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagctctattgaagatctgttagttttaagattttcattgtaatcaggaatacattgtccaacacacaatagttgactatttcattttcccatgatcagGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT