1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aaactatcttctaagttttagggggcaaaaccaaaatcatttagatatgcttaatttttactatagttatgttgccaatgatatgtgttcttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCACTACTGCTTCAGCTATTGTAATTGGTCTGTCACAGATCAAGTATTTCTTG
species | Oryza sativa |
transcript | LOC_Os09g06499.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAG GCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCACEST: gi|29678820|gb|CB675095.1|CB675095
genomic: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAGgtaattctat ... ttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCAC
EST: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAA GCTCGGTTGGCTTATTCGATT-ATTAGCCATTCTGTCATATCTGGCTTCACEST: gi|29613614|gb|CB618627.1|CB618627
genomic: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAGgtaattctat ... ttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCAC
EST: ATGGGATTGCTAAG GCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTTACEST: gi|29614648|gb|CB619661.1|CB619661
genomic: ATGGGATTGCTAAGgtaattctat ... ttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCAC
EST: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAG GCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTTACEST: gi|29674506|gb|CB670781.1|CB670781
genomic: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAGgtaattctat ... ttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCAC
EST: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAC GCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCAC
genomic: TTATTGGCATTCATGGTTGGTGTATTAGAATGCTTGATGGGATTGCTAAGgtaattctat ... ttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCAC
tatgcttaatttttactatagttatgttgccaatgatatgtgttcttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCACTACTGCTTCAGCTATTGTAATTGGTCTGTCACAGATCAAGTATTTCTTG
gcttaat putative branch site (score: 4)
ttcttattt putative PPT
ttaatttttactatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactatcttctaagttttagggggcaaaaccaaaatcatttagatatgcttaatttttactatagttatgttgccaatgatatgtgttcttatttacagGCTCGGTTGGCTTATTCGATTTATTAGCCATTCTGTCATATCTGGCTTCACTACTGCTTCAGCTATTGTAATTGGTCTGTCACAGATCAAGTATTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA