1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cccttttcaatgtgcacaagctgctttatctgaagtattgtgtaattcatgctttagtgcttaccattggaatgggctgattgatgggttgtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGTGGACCAGGGAGGGTGTACATTTGACTGCAGCTGTCTGTTAGCAGAGTG
species | Oryza sativa |
transcript | LOC_Os08g45240.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGEST: gi|40488236|gb|BX898806.1|BX898806
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTG
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGEST: gi|325493905|gb|JG458429.1|JG458429
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTG
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGEST: gi|88518894|gb|CI446548.1|CI446548
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTG
EST: TTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTT-GGTGATGGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTEST: gi|89184670|gb|CI007095.1|CI007095
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGAT-GGGGCTCAAGAAAACTACTCTTACTGCAAAGGTT
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGEST: gi|89173728|gb|CI041621.1|CI041621
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTG
EST: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA TACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTG
genomic: CTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACAgtaagttcct ... gtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttttcaatgtgcacaagctgctttatctgaagtattgtgtaattcatgctttagtgcttaccattggaatgggctgattgatgggttgtacttgcagTACTTTGTTGGGTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGTGGACCAGGGAGGGTGTACATTTGACTGCAGCTGTCTGTTAGCAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - aatgtgc
- - - - - - - - - -gctgctt
- - - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt