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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaattaaggagttcctatctccacgtcatgggctactccttaactgttctgttattcttacaattgctcttttttttttcttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTC

Basic information

species Oryza sativa
transcript LOC_Os08g44930.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88334875|gb|CI648650.1|CI648650
EST:     TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG                         GTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: gi|427716|gb|D23851.1|D23851
EST:     TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG                         GTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: gi|88976228|gb|CI024445.1|CI024445
EST:     TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG                         GTTTTTGAGACCCAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: gi|88484451|gb|CI421722.1|CI421722
EST:     TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG                         GTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
EST: gi|3767637|gb|AU031664.1|AU031664
EST:     TGGATNCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG                         GTTTTTGAGACNAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
genomic: TGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGgtaatgaatt ... cttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actccttaactgttctgttattcttacaattgctcttttttttttcttacttcagGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTC
                                           ttcttac  putative branch site (score: 2)
                    ttcttacaattgctct  CT-rich tract
                                   ttttttttttcttact  TA-rich tract