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gtagattcattcttcttcattcggcctttagatttcagagggaacatcatttgctaaatttgcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAGCATTGGTATAGACCCTTATGTAGTCTTCGAAGATGCAGAATGGGCTCT
species | Oryza sativa |
transcript | LOC_Os08g44810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAEST: gi|29686259|gb|CB682534.1|CB682534
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAEST: gi|58606317|gb|CK034350.1|CK034350
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAEST: gi|30227408|gb|CB965300.1|CB965300
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTACGGGAAGTCAEST: gi|30227998|gb|CB965890.1|CB965890
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAEST: gi|117251104|gb|CT844032.1|CT844032
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAEST: gi|29686257|gb|CB682532.1|CB682532
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAEST: gi|29677717|gb|CB673992.1|CB673992
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
EST: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAG GTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
genomic: AATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGgtagattcat ... gcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCA
tcattcggcctttagatttcagagggaacatcatttgctaaatttgcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAGCATTGGTATAGACCCTTATGTAGTCTTCGAAGATGCAGAATGGGCTCT
tgctaaa putative branch site (score: 65)
tttagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattcattcttcttcattcggcctttagatttcagagggaacatcatttgctaaatttgcaacattagGTGTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAGCATTGGTATAGACCCTTATGTAGTCTTCGAAGATGCAGAATGGGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG