Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT

Basic information

species Oryza sativa
transcript LOC_Os08g44380.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44380.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G074769_T01 (Zea mays), 3'ss of exon 3
aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggc---tctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
   |    | | | ||| | ||| || ||  ||    ||||||| || | |||||| ||    | || | ||| | ||  |||||| | |  |    |||||||||||||||| ||  |||| ||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| || |||||||| || || |||||
-gatgacat-actcttg-gagctgttcatcttgagagcttttgctatatgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactcctgcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT

upper sequence: LOC_Os08g44380.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G369991_T01 (Zea mays), 3'ss of exon 3
aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggc---tctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
   |    | | | ||| | ||| || ||  ||    ||||| | || | |||||| ||    | || | ||| | ||  |||||| | |  |    |||||||||||||||| ||  |||| ||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| || |||||||| || || |||||
-gatgacat-actcttg-gagctgttcatcttgagagctttttctatatgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactcctgcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT

upper sequence: LOC_Os08g44380.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G181194_T01 (Zea mays), 3'ss of exon 4
aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggc---tctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
   |    | | | ||| | ||| || ||   |    ||||||| || | |||||| ||    | || | ||| | ||  |||||| | |  |    |||||||||||||||| ||  |||| ||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| || |||||||| || || |||||
-gatgacat-actcttg-gagctgttcatctggatagcttttgctatatgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactcctgcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT

upper sequence: LOC_Os08g44380.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G170561_T01 (Zea mays), 3'ss of exon 5
aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggc---tctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
   |    | | | ||| | ||| || ||   |    ||||||| || | |||||| ||    | || | ||| | ||  |||||| | |  |    || ||||||||||||| ||  |||| ||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| || |||||||| || || |||||
-gatgacat-actcttg-gagctgttcatctagagagcttttgctatatgtggtctgctttgcctgcccagctgattgaatcatgttgatatcactccttcagGCAAGTTCCCCACTCTGGTCACTCACCAGGAATCCCTGGAATCCAAGGTGAATGAGACGAAGGCTACAGTCAAGTTTCAACTGAAGAAAGTCCTTTGCAT

upper sequence: LOC_Os08g44380.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G144387_T01 (Zea mays), 3'ss of exon 4
aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggctct---gcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
   |    |      || | ||  |  ||   |    ||||||| ||||||||||| |     | || ||||| |  |  |||||| | |  | ||   |||||||||||||| ||  |||||||||||||||| || || || |||||||| || ||||| || || || |||||||||||||| ||||||||||| |||||
---tgacatgtactctgggagcagtgcatctggagtgcttttgctatgtatggtctgcattgtctgccctgctgatagaatcatgttgatatcactactgcagGCAAGTTCCCGACCCTGGTTACTCACCAGGAATCCCTCGAGTCCAAGGTGAACGAGACTAAGGCAACCGTCAAGTTCCAGCTCAAGAAGGTTCTTTGCAT

upper sequence: LOC_Os08g44380.2 (Oryza sativa), 3'ss of exon 4
lower sequence: EDP07503 (Chlamydomonas reinhardtii), 3'ss of exon 3
aagtactgttagtgttgtgtgctcttgattat-gcacacttttg---ccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggctctgcagGCAAGTTCCCTACATTGGTTACT-CACCAGGAGTCTCTTGAATCCAAGGTCA-ATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAA-GAAGGTTCTGTGCAT-
    |  |  ||  |||    |     ||| | |||||         || ||   |  || |  || | ||  |||       | | ||   ||  | |||||  || || |   |||     | |  || || |   |   ||||      |        |      ||    | |||  |     |||  || ||     | | | 
----agcgccagacttgaacaccaaatattgtagcacaaccacaggtccctgaccgccctgcccgccctgccgtgccgcgcttgccttgctctt--ccctgca--cagGTGCTGGACACCAAGTGCAGCATCAAGTTCCAGCTGAAGAAGGTGCTGTGCATGGGCGTGGCCGTGGCCAACGTGGGCATGACCGAGGGCGAGATCCGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33682767|gb|CF311006.1|CF311006
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33665236|gb|CF296203.1|CF296203
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACC
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACC
EST: gi|33823164|gb|CF337382.1|CF337382
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33694097|gb|CF322336.1|CF322336
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|86527437|gb|CI167643.1|CI167643
EST:     CGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33655136|gb|CF277750.1|CF277750
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|55439434|gb|CV733025.1|CV733025
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACA
EST: gi|55433273|gb|CV729688.1|CV729688
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|55433210|gb|CV729649.1|CV729649
EST:     CATCATTAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTT
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTT
EST: gi|89168705|gb|CI038557.1|CI038557
EST:     CCCGTCTCCTTGGTCCTGGTCTATACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|86525434|gb|CI165640.1|CI165640
EST:     AATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|88977440|gb|CI025176.1|CI025176
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGATATCCAAGGTC
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGA-ATCCAAGGTC
EST: gi|33655758|gb|CF278372.1|CF278372
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33671594|gb|CF299833.1|CF299833
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33822843|gb|CF337227.1|CF337227
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|86252708|gb|CI010190.1|CI010190
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|55828000|gb|AU065281.2|AU065281
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33659833|gb|CF282446.1|CF282446
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|24208887|gb|AU225914.1|AU225914
EST:     CATCATCAAGCATATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33657180|gb|CF279794.1|CF279794
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|10931177|gb|AU161451.1|AU161451
EST:     CAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33689536|gb|CF317775.1|CF317775
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|58675234|gb|CK063921.1|CK063921
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|87042110|gb|CI194734.1|CI194734
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|89179996|gb|CI044275.1|CI044275
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33694098|gb|CF322337.1|CF322337
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|86539769|gb|CI179975.1|CI179975
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|2442273|gb|C74044.1|C74044
EST:     ATCATCAAGCAGATCCCCCGTNTTCCTTGGTCCTGGTNTTAACAAGGCAG                         GCAAGTTCCCTA
genomic: ATCATCAAGCAGATCCCCCGTCT-CCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTA
EST: gi|218489369|gb|FG950492.1|FG950492
EST:     CATCATCAAGCAAATCCCCCGTCTCCTGGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|88984771|gb|CI009539.1|CI009539
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33655135|gb|CF277749.1|CF277749
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|33662471|gb|CF293438.1|CF293438
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|86903318|gb|CI313681.1|CI313681
EST:     ATCATCAAGCAGATCCCCCGTCTCCTTGGTGCTGGTCCAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: ATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|55437784|gb|CV732184.1|CV732184
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTAC
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTAC
EST: gi|33664770|gb|CF295737.1|CF295737
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|218488573|gb|FG946164.1|FG946164
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTA
EST: gi|33689687|gb|CF317926.1|CF317926
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|38478543|gb|CF962676.1|CF962676
EST:     CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: gi|88906172|gb|CI375244.1|CI375244
EST:     CCGTCTCCTTGGTCCTGGTCTAAAC-AGGCAG                         GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 181

CTTGTGAAGAAGCTTGCCAAGAAGTACCATGCTTTCTTAGCATCAGAGGCCATCATCAAGCAGATCCCCCGTCTCCTTGGTCCTGGTCTAAACAAGGCAGgcaagtcttc ... ggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatggtctactagcaccgctctgctaactgggtcatgtcgttggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
                        tgctaac  putative branch site (score: 181)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagtactgttagtgttgtgtgctcttgattatgcacacttttgccatgtatggtctactagcaccgctctgctaactgggtcatgtcgttggctctgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAATGAGACGAAAGCTACAGTCAAGTTCCAGCTGAAGAAGGTTCTGTGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
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