1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgctaaaagtcaccattttctgaataccgcagtctttctgacagattgatggcaaactgaatgagagagtatacggtgtttccatttgtaatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAAGACATTGACCAGTTCAGCTGATGCAACCTTTACCTATGACACTTTGCT
species | Oryza sativa |
transcript | LOC_Os08g44340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88721114|gb|CI744413.1|CI744413
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGEST: gi|58591551|gb|CF989859.1|CF989859
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTG
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|58670757|gb|CK059443.1|CK059443
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|33653794|gb|CF276408.1|CF276408
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88354143|gb|CI637709.1|CI637709
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAEST: gi|58672555|gb|CK061241.1|CK061241
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|38568445|gb|CD670660.1|CD670660
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88717903|gb|CI739415.1|CI739415
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAEST: gi|58689760|gb|CK078447.1|CK078447
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88722467|gb|CI745977.1|CI745977
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGEST: gi|88408710|gb|CI686220.1|CI686220
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTG
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88363053|gb|CI616210.1|CI616210
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGEST: gi|58665042|gb|CK053728.1|CK053728
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGG
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|58594766|gb|CF993074.1|CF993074
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88575546|gb|CI669691.1|CI669691
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88408685|gb|CI686192.1|CI686192
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATNTTGCCTCCAEST: gi|58599157|gb|CK009685.1|CK009685
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88330972|gb|CI638380.1|CI638380
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88586453|gb|CI704154.1|CI704154
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGACCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|29636698|gb|CB641707.1|CB641707
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|58591384|gb|CF989692.1|CF989692
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|117233824|gb|CT847763.1|CT847763
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|58586261|gb|CF984569.1|CF984569
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88353573|gb|CI632964.1|CI632964
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|25797720|gb|CA753681.1|CA753681
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|66912833|gb|CX099681.1|CX099681
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|12404688|gb|AU166289.1|AU166289
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: ATTCCGAGAAAG GTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAEST: gi|88744711|gb|CI768071.1|CI768071
genomic: ATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCA
EST: CGTCGGGAGCGGNGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAG GTATCGAGCTGATCCTG
genomic: CGTCGGGAGCGGCGGAGAGAGGCTCTTGCCTGAATGGTATTCCGAGAAAGgtacaattac ... aatgttgcagGTATCGAGCTGATCCTG
attgatggcaaactgaatgagagagtatacggtgtttccatttgtaatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAAGACATTGACCAGTTCAGCTGATGCAACCTTTACCTATGACACTTTGCT
gattgat putative branch site (score: 49)
atttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctaaaagtcaccattttctgaataccgcagtctttctgacagattgatggcaaactgaatgagagagtatacggtgtttccatttgtaatgttgcagGTATCGAGCTGATCCTGAGCACCGAAATTGTCAAGGCTGATCTTGCCTCCAAGACATTGACCAGTTCAGCTGATGCAACCTTTACCTATGACACTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
ttgctaa
- - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - ctttctg
- - - - - - - - - - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatg